YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	APJB_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAMDNMTAD YSPDYFDDAV NSSMCEYDEW EPSYSLIPVL YMLIFILGLT GNGVVIFTVW  60
   61 RAQSKRRAAD VYIGNLALAD LTFVVTLPLW AVYTALGYHW PFGVALCKIS SYVVLLNMYA 120
  121 SVFCLTCLSL DRYMAIVHSL TSTQLRTRGH MRASLTAIWL LSGVLAAPTL LFRTTVYDVE 180
  181 TNRTSCAMDF NLVVSQPGQE TYWIAGLSIS STALGFLIPL LAMMVCYGFI GCTVTRHFNS 240
  241 LRKEDQRKRR LLKIITTLVV VFAACWMPFH VVKTMDALSY LNLAPDSCTF LNLLLLAHPY 300
  301 ATCLAYVNSC LNPLLYAFFD LRFRSQCLCL LNLKKALHAS PASSLSSQKT EAQSLATKV

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.97
Transmembrane Helix	39	60	0.95
Cytoplasmic	61	70	0.91
Transmembrane Helix	71	93	0.89
Non-Cytoplasmic	94	108	0.81
Transmembrane Helix	109	130	0.85
Cytoplasmic	131	150	0.85
Transmembrane Helix	151	172	0.88
Non-Cytoplasmic	173	211	0.89
Transmembrane Helix	212	234	0.89
Cytoplasmic	235	250	0.94
Transmembrane Helix	251	272	0.92
Non-Cytoplasmic	273	295	0.88
Transmembrane Helix	296	316	0.81
Cytoplasmic	317	359	0.89