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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: yrt-PB
Protein type: Transmembrane
Type Confidence: 0.88
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRFLSRRKV RNNYVDNSRE GGGATSSAVG VAGGGGAITS GGSSQIKPQR IVVNKNKIDC  60
   61 RVILLDNTDL SIELSKKALG SFLYEQVFYA LDIIEKDYFG LQFMDANHVK HWLDPTKPIK 120
  121 KQVKIGPPYT FRLKVKFYSS EPNTLREELT RYLFFLQLKQ DLLEGRLDCP EDKATELCAL 180
  181 ALQSELGDYD NQEHSAATVS EFRFVPEQTE DLEIAILDEY KTCRGLTPAQ AETAFLNKAK 240
  241 WLDMYGVDMH TVLGKDGCEY HLGLTPTGIL VFERDQKIGL FFWPKISKLD FKKKKLTLIV 300
  301 IEDDDEGREQ EHTFVFRLYN EKACKHLWKC AVEHHTFFRL RAPVKGPSAR QNFFRMGSRF 360
  361 RYSGRTEFQT TQQSRARRTV QFERRPSQRF ASRQSHLLRE RQKASQEAAV SAVASVNARA 420
  421 AAAAAAAAAS QSPAPATPLV SSQVSTPTPN NDNNNDAFDS LISTDQFITV TPSPSVLTVI 480
  481 QNSAIIEPDA ACSGSISSSS QAAANFASLG RNSLKSNFSN EDPAYSKIGS IGKASGLTVK 540
  541 LDPDYTPPYS PNATKNFDET NPFRNATSSH HGSFGKASIS SGQLRVTINK TFDMDHNTET 600
  601 LKRLSNANEK PNNQVKLANV NTTALPPGNI KCNILKARVE EELGAGGNAK LTNQMFVPAA 660
  661 HSSNMHTSNT NSSNNHAHSD GPDSLNATYI SVGGDKLTLS IPEQKPSTGS SSSSSTSSTA 720
  721 TTTTNGNGPY SNATFVSGFS APLTPPSSLP ANLNNTGSGC NTTLTSVTTI STPSSPTATV 780
  781 STTASESVAP ALSNASAAEI LINEIFINNI INNNASGSIT AETAAKPAGS STPSAGTLLF 840
  841 STLSEQERLE SQKTNQQMNQ SLNLNQNHSE VDAPPSEKKT PSNYPDSSRI PFPSSSNSKD 900
  901 MVSPWLVSSE VVSAPKGRES AIIRKSVITT QL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle