YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|118341413, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDASGSSNSS SSPLCSSYQS NAVLQRHYNY TGKLERGRYR DGLQPEAVAL LCVCLLIIAE  60
   61 NLTVLLALRR NRRFHMPMFY LLGNLALSDL LAGVAYMLNV VLSGRNTLRL TPALWFLREA 120
  121 GVLVTLAASV LCLLAIAVER ACTMRSSRPQ QSSRRRRRMR ALIGLSWALA VLLGALPVLG 180
  181 WNCLQELRWC STVLPLFAKS YVLFCVSVLS GVLLAIVLLY TRIFLLVRAH THAHTHTQRS 240
  241 RKHMALLRTV ALVLGAFILC WTPLFALLLL DVSCPARACP ILFKADYFLG VAMLNSLLNP 300
  301 VIYTLSSRDV RSAVLKLLCC RCTPDTHRHG LQNTLSSANA TSIHKSIYPK LRLSVIT

Type	Start	End	Confidence
Non-Cytoplasmic	1	46	0.82
Transmembrane Helix	47	68	0.79
Cytoplasmic	69	77	0.90
Transmembrane Helix	78	98	0.93
Non-Cytoplasmic	99	119	0.83
Transmembrane Helix	120	138	0.96
Cytoplasmic	139	160	0.85
Transmembrane Helix	161	181	0.93
Non-Cytoplasmic	182	200	0.90
Transmembrane Helix	201	224	0.93
Cytoplasmic	225	244	0.95
Transmembrane Helix	245	267	0.93
Non-Cytoplasmic	268	286	0.84
Transmembrane Helix	287	306	0.76
Cytoplasmic	307	357	0.83