YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|123997069, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMWSNFFLQE ENRRRGAAGR RRAHGQGRSG LTPEREGKVK LALLLAAVGA TLAVLSVGTE  60
   61 FWVELNTYKA NGSAVCEAAH LGLWKACTKR LWQADVPVDR DTCGPAELPG EANCTYFKFF 120
  121 TTGENARIFQ RTTKKEVNLA AAVIAVLGLA VMALGCLCII MVLSKGAEFL LRVGAVCFGL 180
  181 SGLLLLVSLE VFRHSVRALL QRVSPEPPPA PRLTYEYSWS LGCGVGAGLI LLLGAGCFLL 240
  241 LTLPSWPWGS LCPKRGHRAT

Type	Start	End	Confidence
Cytoplasmic	1	40	0.89
Transmembrane Helix	41	62	0.75
Non-Cytoplasmic	63	138	0.70
Transmembrane Helix	139	163	0.91
Cytoplasmic	164	168	0.66
Transmembrane Helix	169	192	0.87
Non-Cytoplasmic	193	220	0.66
Transmembrane Helix	221	246	0.83
Cytoplasmic	247	260	0.63