YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TMEM87B
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	42	0.98
N-region	1	33
H-region	34	39
C-region	40	42
Cleavage Site	42	43
Non-Cytoplasmic	43	215	0.99
Transmembrane Helix	216	237	0.93
Cytoplasmic	238	247	0.80
Transmembrane Helix	248	267	0.93
Non-Cytoplasmic	268	290	0.70
Transmembrane Helix	291	312	0.64
Cytoplasmic	313	318	0.87
Transmembrane Helix	319	343	0.81
Non-Cytoplasmic	344	355	0.76
Transmembrane Helix	356	374	0.95
Cytoplasmic	375	394	0.86
Transmembrane Helix	395	414	0.92
Non-Cytoplasmic	415	433	0.92
Transmembrane Helix	434	453	0.95
Cytoplasmic	454	555	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAACRSVAG LLPRRRRCFP ARAPLLRVAL CLLCWTPAAV RAVPELGLWL ETVNDKSGPL  60
   61 IFRKTMFNST DIKLSVKSFH CSGPVKFTIV WHLKYHTCHN EHSNLEELFQ KHKLSVDEDF 120
  121 CHYLKNDNCW TTKNENLDCN SDSQVFPSLN NKELINIRNV SNQERSMDVV ARTQKDGFHI 180
  181 FIVSIKTENT DASWNLNVSL SMIGPHGYIS ASDWPLMIFY MVMCIVYILY GILWLTWSAC 240
  241 YWKDILRIQF WIAAVIFLGM LEKAVFYSEY QNISNTGLST QGLLIFAELI SAIKRTLARL 300
  301 LVIIVSLGYG IVKPRLGTVM HRVIGLGLLY LIFAAVEGVM RVIGGSNHLA VVLDDIILAV 360
  361 IDSIFVWFIF ISLAQTMKTL RLRKNTVKFS LYRHFKNTLI FAVLASIVFM GWTTKTFRIA 420
  421 KCQSDWMERW VDDAFWSFLF SLILIVIMFL WRPSANNQRY AFMPLIDDSD DEIEEFMVTS 480
  481 ENLTEGIKLR ASKSVSNGTA KPATSENFDE DLKWVEENIP SSFTDVALPV LVDSDEEIMT 540
  541 RSEMAEKMFS SEKIM