YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14043299
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPAGLAAAAA GTPRLPSKRR IPVSQPGMAD PHQLFDDTSS AQSRGYGAQR APGGLSYPAA  60
   61 SPTPHAAFLA DPVSNMAMAY GSSLAAQGKE LVDKNIDRFI PITKLKYYFA VDTMYVGRKL 120
  121 GLLFFPYLHQ DWEVQYQQDT PVAPRFDVNA PDLYIPAMAF ITYVLVAGLA LGTQDRFSPD 180
  181 LLGLQASSAL AWLTLEVLAI LLSLYLVTVN TDLTTIDLVA FLGYKYVGMI GGVLMGLLFG 240
  241 KIGYYLVLGW CCVAIFVFMI RTLRLKILAD AAAEGVPVRG ARNQLRMYLT MAVAAAQPML 300
  301 MYWLTFHLVR

Type	Start	End	Confidence
Cytoplasmic	1	152	0.91
Transmembrane Helix	153	173	0.91
Non-Cytoplasmic	174	187	0.78
Transmembrane Helix	188	209	0.90
Cytoplasmic	210	217	0.74
Transmembrane Helix	218	239	0.81
Non-Cytoplasmic	240	245	0.64
Transmembrane Helix	246	265	0.93
Cytoplasmic	266	284	0.96
Transmembrane Helix	285	306	0.91
Non-Cytoplasmic	307	310	0.84