YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14250060, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQQDSNDDT EDVSLFDAEE ETTNRPRKAK IRHPVASFFH LFFRVSAIIV YLLCGLLSSS  60
   61 FITCMVTIIL LLSCDFWAVK NVTGRLMVGL RWWNHIDEDG KSHWVFESRK ESSQENKTVS 120
  121 EAESRIFWLG LIACPVLWVI FAFSALFSFR VKWLAVVIMG VVLQGANLYG YIRCKVRSRK 180
  181 HLTSMATSYF GKQFLRQNTG DDQTS

Type	Start	End	Confidence
Cytoplasmic	1	34	0.86
Transmembrane Helix	35	54	0.86
Non-Cytoplasmic	55	60	0.57
Transmembrane Helix	61	79	0.91
Cytoplasmic	80	125	0.94
Transmembrane Helix	126	146	0.95
Non-Cytoplasmic	147	152	0.77
Transmembrane Helix	153	172	0.95
Cytoplasmic	173	205	0.97