YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COQ2
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGSRAAGFA RGLRALALAW LPGWRGRSFA LARAAGAPHG GDLQPPACPE PRGRQLSLSA  60
   61 AAVVDSAPRP LQPYLRLMRL DKPIGTWLLY LPCTWSIGLA AEPGCFPDWY MLSLFGTGAI 120
  121 LMRGAGCTIN DMWDQDYDKK VTRTANRPIA AGDISTFQSF VFLGGQLTLA LGVLLCLNYY 180
  181 SIALGAGSLL LVITYPLMKR ISYWPQLALG LTFNWGALLG WSAIKGSCDP SVCLPLYFSG 240
  241 VMWTLIYDTI YAHQDKRDDV LIGLKSTALR FGENTKPWLS GFSVAMLGAL SLVGVNSGQT 300
  301 APYYAALGAV GAHLTHQIYT LDIHRPEDCW NKFISNRTLG LIVFLGIVLG NLWKEKKTDK 360
  361 TKKGIENKIE N

Type	Start	End	Confidence
Cytoplasmic	1	83	0.65
Transmembrane Helix	84	101	0.69
Non-Cytoplasmic	102	161	0.54
Transmembrane Helix	162	195	0.75
Cytoplasmic	196	202	0.77
Transmembrane Helix	203	224	0.82
Non-Cytoplasmic	225	231	0.71
Transmembrane Helix	232	251	0.76
Cytoplasmic	252	277	0.84
Transmembrane Helix	278	298	0.86
Non-Cytoplasmic	299	332	0.78
Transmembrane Helix	333	353	0.86
Cytoplasmic	354	371	0.86