YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|123705279, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.56
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	26	0.56
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	215	0.98
Transmembrane Helix	216	238	0.95
Cytoplasmic	239	249	0.89
Transmembrane Helix	250	270	0.95
Non-Cytoplasmic	271	303	0.92
Transmembrane Helix	304	326	0.85
Cytoplasmic	327	339	0.88
Transmembrane Helix	340	361	0.94
Non-Cytoplasmic	362	385	0.94
Transmembrane Helix	386	409	0.92
Cytoplasmic	410	428	0.95
Transmembrane Helix	429	452	0.90
Non-Cytoplasmic	453	491	0.95
Transmembrane Helix	492	511	0.87
Cytoplasmic	512	667	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCVVDLPWR GMWILSVVSL LSGSMAIHMD SVGSHSLFTC ESIGLRMCQD LPYNNTFMPN  60
   61 LLNHYDQQTA ALAMEPFHPM VNLQCSPDLR PFLCALYAPV CMEYGRVSLP CRSLCHHAKR 120
  121 DCQKLMDMFG VTWPEEMECT RFPDCDESYP RAEDLLVIDD PTDQSPMSVQ RDYGFWCPRE 180
  181 LKMEPDLGYT FLGVRDCSPP CPNMYFRREE LTFARYFIGV VSIVCLSATL FTFLTFLIDV 240
  241 TRFRYPERPI IFYAVCYMMV SLVFFLGFLL EDRVACNSAN PGQYKTSTVT QGSHNKACTL 300
  301 LFMVLYFFTM AGSVWWVILT ITWFLAAVPK WGSEAIEKKA LLFHASAWGI PGMLTIALLA 360
  361 LNKIEGDNIS GVCFVGVYDV QTLRWFVLAP LCLDVLVGVS LLLAGIVALN RVRMEIPLEK 420
  421 ENQEKLVKFM IRIGVFSVLY LVPLLTVVGC YLYEQTYRSV WETTWVQERC REYHIPCPFK 480
  481 VEQTSRPDLV LFLIKYLMVL VVGIPSVFWV GSKKTCFEWA GFFHGRRRKD SGAVHESRQV 540
  541 LQDPDFAQSL LRDPNTPIVR KSRGTSTQGT STHASSTHLA MLDDVRSKAS SVHSKSSFHS 600
  601 SLQRSRDERF TSSTHRGLEE RPAYGSLPRL TDQQPSRHSS TPELSHTPAV SESQQEEQEQ 660
  661 PENGTSA