YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NDFIP1
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALALAALAA VEPACGSRYQ QLQNEEESGE PEQAAGDAPP PYSSISAESA AYFDYKDESG  60
   61 FPKPPSYNVA TTLPSYDEAE RTKAEATIPL VPGRDEDFVG RDDFDDADQL RIGNDGIFML 120
  121 TFFMAFLFNW IGFFLSFCLT TSAAGRYGAI SGFGLSLIKW ILIVRFSTYF PGYFDGQYWL 180
  181 WWVFLVLGFL LFLRGFINYA KVRKMPETFS NLPRTRVLFI Y

Type	Start	End	Confidence
Signal Peptide	1	16	0.97
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	116	0.98
Transmembrane Helix	117	139	0.90
Cytoplasmic	140	146	0.74
Transmembrane Helix	147	169	0.83
Non-Cytoplasmic	170	177	0.91
Transmembrane Helix	178	197	0.95
Cytoplasmic	198	221	0.96