YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25914749, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.86
Transmembrane Helix	27	46	0.88
Non-Cytoplasmic	47	56	0.67
Transmembrane Helix	57	80	0.88
Cytoplasmic	81	90	0.78
Transmembrane Helix	91	111	0.95
Non-Cytoplasmic	112	124	0.81
Transmembrane Helix	125	146	0.90
Cytoplasmic	147	240	0.87
Transmembrane Helix	241	267	0.77
Non-Cytoplasmic	268	278	0.69
Transmembrane Helix	279	299	0.87
Cytoplasmic	300	347	0.58
Transmembrane Helix	348	372	0.48
Non-Cytoplasmic	373	375	0.51
Transmembrane Helix	376	398	0.82
Cytoplasmic	399	461	0.96
Transmembrane Helix	462	484	0.91
Non-Cytoplasmic	485	493	0.71
Transmembrane Helix	494	514	0.80
Cytoplasmic	515	850	0.94
Transmembrane Helix	851	870	0.86
Non-Cytoplasmic	871	904	0.86
Transmembrane Helix	905	925	0.56
Cytoplasmic	926	938	0.53
Transmembrane Helix	939	961	0.87
Non-Cytoplasmic	962	1016	0.49
Transmembrane Helix	1017	1046	0.78
Cytoplasmic	1047	1074	0.67
Transmembrane Helix	1075	1089	0.38
Non-Cytoplasmic	1090	1124	0.46
Transmembrane Helix	1125	1146	0.88
Cytoplasmic	1147	1153	0.41
Transmembrane Helix	1154	1177	0.81
Non-Cytoplasmic	1178	1464	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCLLVFPLVP RSPDYILPCS PGWRLRLAAS FLLSVFPLLD LLPVALPPGA GPGPIGLEVL  60
   61 AGCVAAVAWI SHSLALWVLA HSPHGHSRGP LALALVALLP APALVLTVLW HCQRGTLLPP 120
  121 LLPGPMARLC LLILQLAALL AYALGWAAPG GPREPWAQEP LLPEDQEPEV AEDGESWLSR 180
  181 FSYAWLAPLL ARGACGELRQ PQDICRLPHR LQPTYLARVF QAHWQEGARL WRALYGAFGR 240
  241 CYLALGLLKL VGTMLGFSGP LLLSLLVGFL EEGQEPLSHG LLYALGLAGG AVLGAVLQNQ 300
  301 YGYEVYKVTL QARGAVLNIL YCKALQLGPS RPPTGEALNL LGTDSERLLN FAGSFHEAWG 360
  361 LPLQLAITLY LLYQQVGVAF VGGLILALLL VPVNKVIATR IMASNQEMLQ HKDARVKLVT 420
  421 ELLSGIRVIK FCGWEQALGA RVEACRAREL GRLRVIKYLD AACVYLWAAL PVVISIVIFI 480
  481 TYVLMGHQLT ATKVFTALAL VRMLILPLNN FPWVINGLLE AKVSLDRIQL FLDLPNHNPQ 540
  541 AYYSPDCGRL GAQIKWLLCS DPPAEPSTVL ELHGALFSWD PVGTSLETFI SHLEVKKGML 600
  601 VGIVGKVGCG KSSLLAAIAG ELHRLRGHVA VRGLSKGFGL ATQEPWIQFA TIRDNILFGK 660
  661 TFDAQLYKEV LEACALNDDL SILPAGDQTE VGEKGVTLSG GQRARIALAR AVYQEKELYL 720
  721 LDDPLAAVDA DVANHLLHRC ILGMLSYTTR LLCTHRTEYL ERADAVLLME AGRLIRAGPP 780
  781 SEILPLVQAV PKAWAENGQE SDSATAQSVQ NPEKTKEGLE EEQSTSGRLL QEESKKEGAV 840
  841 ALHVYQAYWK AVGQGLALAI LFSLLLMQAT RNAADWWLSH WISQLKAENS SQEAQPSTSP 900
  901 ASMGLFSPQL LLFSPGNLYI PVFPLPKAAP NGSSDIRFYL TVYATIAGVN SLCTLLRAVL 960
  961 FAAGTLQAAA TLHRRLLHRV LMAPVTFFNA TPTGRILNRF SSDVACADDS LPFILNILLA1020
 1021 NAAGLLGLLA VLGSGLPWLL LLLPPLSIMY YHVQRHYRAS SRELRRLGSL TLSPLYSHLA1080
 1081 DTLAGLSVLR ATGATYRFEE ENLRLLELNQ RCQFATSATM QWLDIRLQLM GAAVVSAIAG1140
 1141 IALVQHQQGL ANPGLVGLSL SYALSLTGLL SGLVSSFTQT EAMLVSVERL EEYTCDLPQE1200
 1201 PQGQPLQLGT GWLTQGGVEF QDVVLAYRPG LPNALDGVTF CVQPGEKLGI VGRTGSGKSS1260
 1261 LLLVLFRLLE PSSGRVLLDG VDTSQLELAQ LRSQLAIIPQ EPFLFSGTVR ENLDPQGLHK1320
 1321 DRALWQALKQ CHLSEVITSM GGLDGELGEG GRSLSLGQRQ LLCLARALLT DAKILCIDEA1380
 1381 TASVDQKTDQ LLQQTICKRF ANKTVLTIAH RLNTILNSDR VLVLQAGRVV ELDSPATLRN1440
 1441 QPHSLFQQLL QSSQQGVPAS LGGP