YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|117645860
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPPGPPPAY APTNGDFTFV SSADAEDLSG SIASPDVKLN LGGDFIKEST ATTFLRQRGY  60
   61 GWLLEVEDDD PEDNKPLLEE LDIDLKDIYY KIRCVLMPMP SLGFNRQVVR DNPDFWGPLA 120
  121 VVLFFSMISL YGQFRVVSWI ITIWIFGSLT IFLLARVLGG EVAYGQVLGV IGYSLLPLIV 180
  181 IAPVLLVVGS FEVVSTLIKL FGVFWAAYSA ASLLVGEEFK TKKPLLIYPI FLLYIYFLSL 240
  241 YTGV

Type	Start	End	Confidence
Cytoplasmic	1	114	0.95
Transmembrane Helix	115	132	0.93
Non-Cytoplasmic	133	139	0.67
Transmembrane Helix	140	159	0.94
Cytoplasmic	160	166	0.80
Transmembrane Helix	167	189	0.90
Non-Cytoplasmic	190	195	0.77
Transmembrane Helix	196	216	0.92
Cytoplasmic	217	224	0.87
Transmembrane Helix	225	243	0.91
Non-Cytoplasmic	244	244	0.94