YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPAA1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLSDPVRR RALARLVLRL NAPLCVLSYV AGIAWFLALV FPPLTQRTYM SENAMGSTMV  60
   61 EEQFAGGDRA RAFARDFAAH RKKSGALPVA WLERTMRSVG LEVYTQSFSR KLPFPDETHE 120
  121 RYMVSGTNVY GILRAPRAAS TESLVLTVPC GSDSTNSQAV GLLLALAAHF RGQIYWAKDI 180
  181 VFLVTEHDLL GTEAWLEAYH DVNVTGMQSS PLQGRAGAIQ AAVALELSSD VVTSLDVAVE 240
  241 GLNGQLPNLD LLNLFQTFCQ KGGLLCTLQG KLQPEDWTSL DGPLQGLQTL LLMVLRQASG 300
  301 RPHGSHGLFL RYRVEALTLR GINSFRQYKY DLVAVGKALE GMFRKLNHLL ERLHQSFFLY 360
  361 LLPGLSRFVS IGLYMPAVGF LLLVLGLKAL ELWMQLHEAG MGLEEPGGAP GPSVPLPPSQ 420
  421 GVGLASLVAP LLISQAMGLA LYVLPVLGQH VATQHFPVAE AEAVVLTLLA IYAAGLALPH 480
  481 NTHRVVSTQA PDRGWMALKL VALIYLALQL GCIALTNFSL GFLLATTMVP TAALAKPHGP 540
  541 RTLYAALLVL TSPAATLLGS LFLWRELQEA PLSLAEGWQL FLAALAQGVL EHHTYGALLF 600
  601 PLLSLGLYPC WLLFWNVLFW K

Type	Start	End	Confidence
Cytoplasmic	1	19	0.89
Transmembrane Helix	20	39	0.96
Non-Cytoplasmic	40	364	0.97
Transmembrane Helix	365	387	0.86
Cytoplasmic	388	421	0.89
Transmembrane Helix	422	444	0.85
Non-Cytoplasmic	445	460	0.73
Transmembrane Helix	461	480	0.89
Cytoplasmic	481	500	0.80
Transmembrane Helix	501	525	0.88
Non-Cytoplasmic	526	542	0.80
Transmembrane Helix	543	564	0.94
Cytoplasmic	565	571	0.81
Transmembrane Helix	572	590	0.78
Non-Cytoplasmic	591	596	0.72
Transmembrane Helix	597	619	0.90
Cytoplasmic	620	621	0.81