YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|117558822
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAGGRPVGLS AGFEVPSCAC AAAVMKAMAA EEEVDSADAG GGSGWLTGWL PTWCPTSTSH  60
   61 LKEAEEKMLK CVPCTYKKEP VRISNGNSIW TLMFSHNMSS KTPLVLLHGF GGGLGLWALN 120
  121 FEDLSTDRPV YAFDLLGFGR SSRPRFDSDA EEVENQFVES IEEWRCALRL DKMILLGHNL 180
  181 GGFLAAAYSL KYPSRVSHLI LVEPWGFPER PDLADQERPI PVWIRALGAA LTPFNPLAGL 240
  241 RIAGPFGLSL VQRLRPDFKR KYSSMFEDDT VTEYIYHCNV QTPSGETAFK NMTIPYGWAK 300
  301 RPMLQRIGGL HPDIPVSVIF GARSCIDGNS GTSIQSLRPK SYVKTIAILG AGHYVYADQP 360
  361 EEFNQKVKEI CHTVD

Type	Start	End	Confidence
Cytoplasmic	1	101	0.56
Transmembrane Helix	102	119	0.43
Non-Cytoplasmic	120	375	0.72