YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|117168261, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILTHTYSKQ ENFSICFNSE IQLLPRFKKK MLKARMDLRT MAIGIVLSLQ TALGILGNFF  60
   61 LLFYYLILYF NKHTLKVIYR IFIHMFISNS LINISIGIPG AFEAFGWNLV FNDFGCKLLF 120
  121 YIQRLARSMS ISTTCLLSVF WVITISPRNY CWKEFKIKTT KFVNLSICLS WILLMLVNML 180
  181 FPVYTTTKRN LENVTQMSDS QFCYSVDHDK IVYLLYIAFC MFPEVLLSIL LVCSSIFMIV 240
  241 ILYVHKKRVQ HTLHAHSSLR TSTENRAVQT ILVLVCTFVV FCTLSSILLG YIALLDNPSR 300
  301 WLMNITAIIS MCFPTLGPFV IGCDFTLFRF CFTWTRNIKI P

Type	Start	End	Confidence
Non-Cytoplasmic	1	45	0.80
Transmembrane Helix	46	68	0.88
Cytoplasmic	69	80	0.73
Transmembrane Helix	81	102	0.85
Non-Cytoplasmic	103	124	0.83
Transmembrane Helix	125	145	0.86
Cytoplasmic	146	161	0.82
Transmembrane Helix	162	184	0.88
Non-Cytoplasmic	185	224	0.88
Transmembrane Helix	225	245	0.93
Cytoplasmic	246	269	0.92
Transmembrane Helix	270	293	0.92
Non-Cytoplasmic	294	304	0.85
Transmembrane Helix	305	328	0.89
Cytoplasmic	329	341	0.88