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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: nkcc-1
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.82
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGNGENGTD EKQKLLSVVG VVSEEVVEMN RVSSARFQVS KTDEDEKTSD DNLRKLKSGS  60
   61 EPPPPTQNHE AVTLVTRKMS ATGRFMVTSD TNPGQLVAEV ADELGIDVPI DPPAEKSPAS 120
  121 RAKGVHFSVG DKDSGSMSED GDEKRNITHE NQTTFNMKSW RNMKTIEHPP IIDFYRNSID 180
  181 TDGVFNRPSM AQLIHGKEHK EQDLGFEELN AQHHHLEDSP VHETKNEYRM EKMHAPPSQN 240
  241 RVKFGWIQGV FVRCLLNIFG VMLYLRVSWV SGQAGVGLGS CIVLLASVVT TITALSTCAI 300
  301 CTNGDVKGGG AYFLISRSLG PEFGGSIGII FSIANAVGAA MYIVGFAESF RDVLIDYNIG 360
  361 TIFDGGLWDV RVIGFVTCVI LMGIVFIGSE FESKMQLGLL VILLVSIANY VFGSFFPPNE 420
  421 IAMNRGATGY SLDTLQSNFM PHFTENNTFF SVFSVYFPAA TGIMAGANIS GDLANPQQAI 480
  481 PLGTLLAILV TTIVYLLTVW MTGSTVVAFS NGTEPAVFNN SYFVPPDCTP DCPFGLVSYY 540
  541 QVVEMSSFWG PLITAGIFAA TLSSALASLV SAPKVFQAVC KDRLFPRIDY FAKTYGKNEE 600
  601 PKRAYVLGFF LAMGIVAIGD LNVIAPIISN FFLGSYALIN YACFDQSFAD SPGFRPGFTY 660
  661 YNMWISLVGA LLCVFVMFII DWFSALVTFF CFGAIFMYLL HRKPDVNWGS STQAHSYKNA 720
  721 LSAMIKLSTT EEHVKNYRPQ VLVLSGNPAS RSCLVDFANN ITKGSSLLVC GQVVPYEPSD 780
  781 RVYMVMKRLD ENINVWLRKR HLKAFYRAVA NSNFRKGAQS LIQLTGIAKM KPNIVLMGFK 840
  841 SNWYKGGPTE TNLNEMNEYF GTIQDVFDWN MAMCVLRNGQ VGLDFSEAMR NLNLIEPNRL 900
  901 NVPPIEEKEK EKEKTNENSP ETVHLIEKDE TARTDKSGDD GSSSISINET YVSDENQEDA 960
  961 DGDDDNDNDG EESGADDEHQ KEDDVELGVI DEQEKRHFSL RRRGSRRHTV EQKALLSSIQ1020
 1021 RFNRKVKKGT IDVWWLYDDG GLTLLIPHLL AIPKSYLEGA RLRIFTISTS SRTMEQEQRG1080
 1081 MAALLSKFRI DYSDVYVIAD IGKKPRQETM NTWQSVIDPF IAQDGSCPIG MTTKSELSAQ1140
 1141 RDKTYRQLRA GELLNEHSIN ADLIVMTLPV PRKGMVSSSL YMSWLEVMTR NLPPVLLVRG1200
 1201 NQQSVLTFYS 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle