YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116282547, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDWTLWICFL VCCTPGLIAG EQKKLNLTFD IWEGNVTVLW DPPNKAPVPA FYQVKLALDT  60
   61 GPHAKWNIVQ ECDMITETKC NLGNFIFKPT MKVKIELISG NNESSWLVIR RIRLDYIKLL 120
  121 SPDFDLFSGP NTVKVKIHRK PFLKELFPYG LSYSAILYPR GQESKAKTLS DDDDEDGEVE 180
  181 FTDLSYWQTY CVRVRLEITS IAVSNTSLPR CIHPPTDLSV VISIGVIGVV GVITLFMLFV 240
  241 CFFLRRPGKM PAVLKLAVNG WLPMNVGQTE VESVTQKGWL LNSNKIAEKT KAFDEIEELS 300
  301 EDEKERREST DSGVSIGQQD SIKNRPQREE DSGCGSLTGT EDSLSSGRRS LEELPFLDGG 360
  361 GNSSSVEGTR EDSGLGIQTQ DISDKPKPMH DDLLSEIVVI GDGYRSQSPS AEAETETTIQ 420
  421 CDEDANMVSR TNGYRSGQVT CLCSDSETCM WCKTRKHLTD CDSFSHKQTV NDNDRSSYLK 480
  481 KSPLETVNMF GLDDLSCHSD KTEESSLFIT CPLLLKEPYK LDTLPLTLGD VELTFT

Type	Start	End	Confidence
Signal Peptide	1	19	0.94
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	219	0.98
Transmembrane Helix	220	244	0.89
Cytoplasmic	245	536	0.92