YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|117646506
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGELPPNIN IKEPRWDQST FIGRANHFFT VTDPRNILLT NEQLESARKI VHDYRQGIVP  60
   61 PGLTENELWR AKYIYDSAFH PDTGEKMILI GRMSAQVPMN MTITGCMMTF YRTTPAVLFW 120
  121 QWINQSFNAV VNYTNRSGDA PLTVNELGTA YVSATTGAVA TALGLNALTK HVSPLIGRFV 180
  181 PFAAVAAANC INIPLMRQRE LKVGIPVTDE NGNRLGESAN AAKQAITQVV VSRILMAAPG 240
  241 MAIPPFIMNT LEKKAFLKRF PWMSAPIQVG LVGFCLVFAT PLCCALFPQK SSMSVTSLEA 300
  301 ELQAKIQESH PELRRVYFNK GL

Type	Start	End	Confidence
Cytoplasmic	1	96	0.96
Transmembrane Helix	97	119	0.74
Non-Cytoplasmic	120	146	0.86
Transmembrane Helix	147	168	0.72
Cytoplasmic	169	174	0.65
Transmembrane Helix	175	196	0.65
Non-Cytoplasmic	197	228	0.47
Transmembrane Helix	229	248	0.76
Cytoplasmic	249	264	0.46
Transmembrane Helix	265	288	0.87
Non-Cytoplasmic	289	322	0.53