YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TPC2_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	93	0.93
Transmembrane Helix	94	113	0.94
Non-Cytoplasmic	114	170	0.69
Transmembrane Helix	171	194	0.86
Cytoplasmic	195	229	0.55
Transmembrane Helix	230	253	0.87
Non-Cytoplasmic	254	300	0.60
Transmembrane Helix	301	325	0.87
Cytoplasmic	326	447	0.86
Transmembrane Helix	448	471	0.89
Non-Cytoplasmic	472	482	0.77
Transmembrane Helix	483	507	0.77
Cytoplasmic	508	518	0.74
Transmembrane Helix	519	541	0.88
Non-Cytoplasmic	542	553	0.77
Transmembrane Helix	554	574	0.83
Cytoplasmic	575	594	0.87
Transmembrane Helix	595	617	0.90
Non-Cytoplasmic	618	661	0.90
Transmembrane Helix	662	681	0.60
Cytoplasmic	682	693	0.51
Transmembrane Helix	694	717	0.86
Non-Cytoplasmic	718	774	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEEPLLAGS INQGSGDYGA HSESCLHYPD EHTPRSRRLS YSVTDDSCNV EEDADADLYV  60
   61 QQAVVFIEDA IKYRSINHRV DSGSLRLYRW YYSNLCQWGL GLTIAVVLAL AFIERPSSLT 120
  121 YTSDIRVKPK PWEPPCGMTE GIEIVCLCIF ILDVTAKGYL IGWEEFRMNK WLLAYLIVIT 180
  181 ASVIDWMLSI SMLCDENLRV RRLIRPFFLL QNSSLMKKTL KCIKRTLPEI ASVILLLALH 240
  241 ICLFTMIGML IFAKSDDPKQ NGEWQTYFRN LPKALSSLLV LLTTANNPDV MIPAYSLNRG 300
  301 YSIFFILFSV FGTYLLMNLM TAIIYNQFRG YLLMSVQTSI IRRRLGIRAA FEVLCCPGRG 360
  361 HTSTQAEGHV ERVAVSMFLK VMERVHMKSY CRQAIVKAAR RFPDGFISGE DFQRLFNELD 420
  421 KDFVKEHPPK PEYSSSGLQH IQYVYSHYYI SVLGNAVALA NVICICTVLV LNAEKSASEK 480
  481 NYFYMEIINC IFILYYLIEM LLKIVAFGWK GYLSYRNNIF DGFLTVLLLA IQIVIFITFK 540
  541 IPYVDVDPVP RHVMALWEMI RLVNMLIVFR FLRIIPEIKL MAVVASTIVD LVKNLRAFAG 600
  601 ILLVVYYMFA VLGIWLFQGA ISPPSNMSLV SNSSLENITG PYSMECGTFE QLEYWPNNFD 660
  661 DFASSLILLY NIMVVNNWHV FTDAYARYTT DWSLVYFVVW WLTSSVMWVN LFVALILENF 720
  721 TYKWDRSNGL SVEDVERIAY QSTVQLMFKE HVKEPTEEEL LAQLHQHPHL HLSW