YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116487654, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAVWMLPVL LVLPLLLWTS STFVFYFKKC FYVAYMMLLA VIAIPICILK SGGRDIENMR  60
   61 VIRFLVRHVK YFLGLRYQVS GWEHLQTEGP YVIISNHQSS LDVLGMVEIL PDRCTMIAKK 120
  121 ELIWAGTVGM ICWLGGIVFI NRKKTSDAKN VMSDAAKTML TDKIRLWVFP EGTRNQNGGL 180
  181 LPFKKGAFHL AIQAQVPIIP IVFSSYSKFY LRKEKEFKSG TITLKVLPKI ETKGLTADDV 240
  241 TTLSDQAFGV MRSAFMEISG QSAQSNGPST H

Type	Start	End	Confidence
Cytoplasmic	1	6	0.77
Transmembrane Helix	7	26	0.92
Non-Cytoplasmic	27	31	0.77
Transmembrane Helix	32	53	0.90
Cytoplasmic	54	121	0.92
Transmembrane Helix	122	140	0.89
Non-Cytoplasmic	141	188	0.86
Transmembrane Helix	189	210	0.50
Cytoplasmic	211	271	0.65