YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ASPH2_DANRE
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEWSLERMRE WVAGGMQSVR ECESSALGTA LCLALLFIWY CYRVGCEHTS PSLRGGFSPE  60
   61 PRVGAVPGVL ASELSSRGGS SKLRQIGGVG GGGVSDEELN GFAYCQSSEC FRCTKPGEGL 120
  121 NQRLYHSLQE YAKRYTWAGM GRVHKGVREQ GRYLLCSRPS IQKPEVFFLP DLPSAPFFSR 180
  181 EAQKHDVELL ERSFPALLAE FESVYRLPSS RTGSSLPPGW KANSTPRGQW WTFYLVNQGT 240
  241 PMVLNARRCP RTWRVLGQLR TFIANNVFGN ACFSVLSPGS TITEHYGPTN VRLRCHLGLK 300
  301 VPSGCELVVG GEPQCWSEGS CLLFDDSFLH TAFHDGSAED GPRAVFMVDL WHPNVAAAER 360
  361 QALDYIFTPG R

Type	Start	End	Confidence
Cytoplasmic	1	20	0.65
Transmembrane Helix	21	42	0.65
Non-Cytoplasmic	43	371	0.94