YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S35A4_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.88
Transmembrane Helix	21	39	0.95
Non-Cytoplasmic	40	47	0.77
Transmembrane Helix	48	72	0.70
Cytoplasmic	73	78	0.57
Transmembrane Helix	79	101	0.69
Non-Cytoplasmic	102	117	0.61
Transmembrane Helix	118	137	0.77
Cytoplasmic	138	145	0.86
Transmembrane Helix	146	166	0.89
Non-Cytoplasmic	167	174	0.87
Transmembrane Helix	175	197	0.92
Cytoplasmic	198	212	0.82
Transmembrane Helix	213	231	0.92
Non-Cytoplasmic	232	239	0.84
Transmembrane Helix	240	262	0.87
Cytoplasmic	263	268	0.83
Transmembrane Helix	269	290	0.82
Non-Cytoplasmic	291	293	0.65
Transmembrane Helix	294	313	0.81
Cytoplasmic	314	314	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAISADESP ESSSPALRLR WLFLLLLLVL IYGSHAPLLS LCKTQAQIPF SASSCVLLIE  60
   61 TSKLFISFAS LLASGSVSTL RISISMTTAS PYAVPAVLYA FNNHLVVFMQ AYMDPSSFQV 120
  121 LSNLKIASTA LLYTSCLGKR LHRRQWFAMG LLVSAGVSHS CFSYDLEGKR ETAVYITSWG 180
  181 LLLVLVYCFV SGLAAVYTER VLKSQRLPLS MQNLFLYTFG VVVNLASHLS GGEQKGFFEG 240
  241 YSAVVWVIVA GQVANGLLMS VVMKHGTGIT RLFVISSAML VNAVLSWGIL GVQLTGYFLF 300
  301 PVVLIGWAVY LYYT