YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116317790
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQALQDPV AEPHGAEPAA AGAPPAVVPG KEFTRTCKGL VVVLVGEYVL LQLLPSSLDY  60
   61 LAISPHKTIP FVWTVFTAGY IEQVLPGAIG SSLGLLFCGK DIEPVWGRKE FLKFIILVNS 120
  121 ICGVLAFCFA VALYYVTGKE SFLVTPLSGF HGALAGFLVG LKQLLPNLEL PMCFFWKIKA 180
  181 KWMPFFVLCF STIMAFIVPD SINFLPTLLS GMYVSWIYLR YFQRNPLTGL KGDSSDDFSF 240
  241 PSLFPDAMRP VTDPVANLFD RMLCARSRPS ELALPVSDPA KALRRRERGE RVLEERLAAD 300
  301 HAADTEAPAL GHSTAED

Type	Start	End	Confidence
Cytoplasmic	1	38	0.88
Transmembrane Helix	39	58	0.68
Non-Cytoplasmic	59	78	0.68
Transmembrane Helix	79	99	0.78
Cytoplasmic	100	113	0.89
Transmembrane Helix	114	136	0.93
Non-Cytoplasmic	137	141	0.90
Transmembrane Helix	142	165	0.84
Cytoplasmic	166	181	0.85
Transmembrane Helix	182	198	0.96
Non-Cytoplasmic	199	203	0.67
Transmembrane Helix	204	222	0.65
Cytoplasmic	223	317	0.66