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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|116311953
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.80
Topology Confidence: 0.74
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVSHLLLHG GVLLLLLAAA AVQAQRVATR TDPTEAAALN AVFAKLGQQA ASTWNLSGDP  60
   61 CTGAATDGTP IDDNPNFNPA IKCDCTFQNN TICRITKLKI YALDVPGTIP QELRNLTRLT 120
  121 HLNLGQNILT GPLPSFIGEL TNMQNMTFRI NSLSGPIPKE LGNLTNLVSL GLGSNRFNGS 180
  181 LPSELGNLDK LQELYIDSAG LSGPLPSSFS KLTRMQTLWA SDNDFTGQIP DYIGNWNLTD 240
  241 LRFQGNSFQG PIPSALSNLV QLSSLILRNC KISDNLASID FSKFASLNLL DFSYNQLSGN 300
  301 FPPWASGKNL QLNLVANNFV IDSSNNSVLP SGLACLQRNT PCSPKSSSFA VDCGSNRLIS 360
  361 GSDNFRYQTD DASLGAASYS VTGEPTWGVS NVGKFMDAPN GSYIIYSSRQ FQNTLDSELF 420
  421 QTSRMSPSSL RYYGIGLENG NYTVTLQFAE FGIEDTQSYK SLGRRVFDIY LQGERQEKNF 480
  481 DIRKAAGDKS YTVVKKSYKV PVTKNFLEIH LFWAGKGTCC IPGQGYYGPT ISALSVTPAV 540
  541 LGLVALVAIF MWRQKRRKLS LEQQELYSIV GRPNVFSYSE LRSATENFSS NNRLGEGGYG 600
  601 AVYKGKLNDG RVVAVKQLSQ TSHQGKKQFA TEIETISRVQ HRNLVKLYGC CLEGNNPLLV 660
  661 YEYMENGSLD KALFGTEKLN IDWPARFDIC LGIARGLAYL HEESSIRVVH RDIKASNVLL 720
  721 DANLSPKISD FGLAKLYDDK KTHVSTKVAG TFGYLAPEYA MRGHMTEKVD VFAFGVVLLE 780
  781 TLAGRPNYDD TLEEDKIYIF EWAWELYENN NPLGIVDSNL REFNRVEVLR AIHVALLCTQ 840
  841 GSPHQRPPMS RVVSMLTGDT EVTDVLMKPS YITEWQIKGG NTSFANSAVR GQSSSAPGST 900
  901 SQQASSVFLN SIIQEGR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle