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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|116311954
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGWRMAVSRL LHGCVLVLLL AAAVVQAQRA ATRTDPTEAA ALNAVFAKLG QQAQSSWNLS  60
   61 GDPCTGRATD GSAIDDTSFN PAITCDCTFQ NSTICRITKL KIYAVDASGQ IPEELRNLTR 120
  121 LTDLNLGQNL LSGPLPSFIG ELTNMQKMTF GINSLSGPIP KELGNLTNLI SLGLGSNHFN 180
  181 GSLPTELGNL INLQELYIDS AGLSGPLPSS LSKLTRMQIL WASDNNFTGQ IPDYIGSWNL 240
  241 TDLRFQGNSF QGPIPAALSN LVQLSSLILR NCRISDNLVS LDFSKFASLS LLDFSYNQLS 300
  301 GNFPPWASDK NLQFILPSGL ACLQRNTPCF PGSPQSSSFA VNSGSNRFIS GSDNLRYETD 360
  361 DVNLRAASYY VTGAPTWGVS NVGKFMEAPN GSYIIYSSRQ FQNTLDSELF QTSRMSPSSL 420
  421 RYYGIGLENG NYTVTLQFAE FGIEDTQSWK SLGRRVFDIY VQGERKEKNF DIRKTAGDKS 480
  481 YTVVKKQYKV PVTKNFLEIH LFWAGKGTCC IPTQGYYGPT ISALSVIPAD FTPTVGNTAQ 540
  541 KNKSTSKTGV IVGVVVGVTV LGLVALVGIF MWRQKRRKLS LEQQELYSIV GRPNVFSYSE 600
  601 LRSATENFSS SNRLGEGGYG AVYKGKLTDG RVVAVKQLSQ TSHQGKKQFA TEIETISRVQ 660
  661 HRNLVKLYGC CLEGNNPLLV YEYMENGSLD KALFGTEKLT IDWPARFEIC LGIARGLAYL 720
  721 HEESSIRVVH RDIKASNVLI DANLNPKISD FGLAKLYDDK KTHVSTKVAG TFGYLAPEYA 780
  781 MRGHMTEKVD VFAFGVVLLE TLAGRPNYDD TLEEDKIYIF EWAWELYENN NPLGLVDPKL 840
  841 KEFNREELLR AIRVALLCTQ GSPHQRPPMS RVASMLAGDV EVPDVLTKPS YITEWQIKGG 900
  901 NTSFANSAVS GQSSSAPGSA SEQQGSSLFL NSVIPEGR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle