YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIP12_ORYSJ
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGKEEDVRL GANKFSERQP IGTAAQGSDD KDYKEPPPAP LFEPGELKSW SFYRAGIAEF  60
   61 MATFLFLYIT VLTVMGVNNS TSKCATVGIQ GIAWSFGGMI FALVYCTAGI SGGHINPAVT 120
  121 FGLFLARKLS LTRALFYMVM QCLGAICGAG VVKGFQKGLY ETTGGGANVV APGYTKGDGL 180
  181 GAEIVGTFIL VYTVFSATDA KRNARDSHVP ILAPLPIGFA VFLVHLATIP ITGTGINPAR 240
  241 SLGAAIIYNR GHAWDDHWIF WVGPFIGAAL AAIYHQVVIR AIPFKSRS

Type	Start	End	Confidence
Cytoplasmic	1	51	0.97
Transmembrane Helix	52	72	0.86
Non-Cytoplasmic	73	91	0.79
Transmembrane Helix	92	115	0.81
Cytoplasmic	116	133	0.72
Transmembrane Helix	134	155	0.91
Non-Cytoplasmic	156	178	0.90
Transmembrane Helix	179	198	0.90
Cytoplasmic	199	208	0.88
Transmembrane Helix	209	229	0.89
Non-Cytoplasmic	230	256	0.89
Transmembrane Helix	257	278	0.93
Cytoplasmic	279	288	0.90