YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116310791, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSQGFGPGG SPKSFRYPRS DFDLESGIAR KGLRKPKNHD APGLLTSTLM KIRYFYEAHP  60
   61 VAVAFILLSF GLSVLILLSV YETRFRMMRG SSGEVGEYPL PELRNLVMVA GHSIYTSESC 120
  121 GKIDREDSWF LEPYQKHPGQ AATFLAHIKE GVGIAARDEK ALLLFSGGET RKDAGPRSEA 180
  181 QSYWTIADSK GWFGNDESVR RRALTEEHAR DSFENLLFSV CRFRELTGSY PQNITVVSYD 240
  241 FKEERFAQLH RSALGFPEGR FFFLGTPATL TARESAVKGE AAVRSQFQED PYGCLGSLHM 300
  301 KRLKRDPFHR AIPYPNGCPE LKGLFSYCGL VPYPGQLPWT Q

Type	Start	End	Confidence
Cytoplasmic	1	57	0.63
Transmembrane Helix	58	81	0.88
Non-Cytoplasmic	82	341	0.61