YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116309456
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGMGQQKRR PLVVMASAQA AARGGGNPLA ELNDRVKTLE GGLRAWLAKQ PTHVEAAVAT  60
   61 AVGAVQGGAL GGLMGTLAPD GGSPFPVPQP PPGADPNALA SFKQAQALAG GPLVQARNFA 120
  121 VMTGANAGIS CVMRRIRGVE DVQGSMAAAF GSGALFSIVS GMGSPNPVAN AITTGVAFAV 180
  181 FQGGFFMIGQ KFSQPPSEDI YYSRGRNMLK QLGLQNYEKN FKKGLLTDQT LPLLNDSALR 240
  241 DVKIPPGPRL LILDHIQRDP ELTKST

Type	Start	End	Confidence
Cytoplasmic	1	55	0.91
Transmembrane Helix	56	78	0.70
Non-Cytoplasmic	79	113	0.74
Transmembrane Helix	114	133	0.61
Cytoplasmic	134	141	0.77
Transmembrane Helix	142	162	0.86
Non-Cytoplasmic	163	168	0.71
Transmembrane Helix	169	189	0.88
Cytoplasmic	190	266	0.90