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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|116309773, gi...
Protein type: Transmembrane
Type Confidence: 0.94
Topology Confidence: 0.44
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQGSAPLDG SVLPPSRIVS ERQAGLPRRF MPESATGREV VELGEGRPAP HYPGRSVFFL  60
   61 SFAMAGLVPP FSSFFMDVLE FYDLQMAHLT PNAVMTLAIF AHLCEMFIGV RPSLRLFRWF 120
  121 FTVQPDVTYF QPRGPVLSRY IPCVIRKKWD DWKSDWFYTT LADEARLRLP SQPPAQASNW 180
  181 RAPVDLGDGY DAVLDRLAGL RSQGLTGAMV YGDYLRRRIA PLQRRARGAW EYTGSEDYMR 240
  241 THQGGRWDWA PEDFKMVVQR VLNLSSVEAS LIPQGVLPLC SDPDRANILT IMQAVGASEE 300
  301 RAPRGHDGAG GSRRGKQSTP GGGHASGPRD GGPGGSRPAD ARGKRKQEGT PPPSPPRGGG 360
  361 AVRASSKRPE GAVPTPQPEG ERKKKRLRKM GGTEPCQRNL ISPPRWSFSR PPRSEIPPRP 420
  421 SRHSKSGRSE AEETATAEAR RREADRREAA DRLREAEEAA QEAVRAACQA PDLTPPEATT 480
  481 TSEATHDEAA GAPLGLDPSS DVWDEPASRD APGSGTSISG PSRVAPIPRR FSPLPSAAPL 540
  541 NAEPLLQALA AANTTVLDGL SAQMEVLQAE RAELDAAWAR VEEGRRSVEA MVEAGRKAHH 600
  601 RHASELEARR RNLAEIAREV EEERETALIA TAVLDEVRDD LHLQYGSRAA ELEKKLDAAR 660
  661 GILDAAAARE RRAAEIEAAS RKREEALEAR ATALEERARA KERDLADREA AVAIREATLA 720
  721 AHEAACAEEE SALRLREDAL AERERALKEA EAAAQRLADS LFLRETAQEE QARRNLEGAR 780
  781 AERVALDQRA AELEARAKEL DARAHSGGAA AGHGDLVARL AAAEHTIAEM QGALDSSAGE 840
  841 VEALRLANKV GPGMLRDAVS RLDRAGRQAG LWGERTAKYA ANQGGLAQRF SEMAGTLQRL 900
  901 PEELEETIKS SSRDLARGAV ELVLASYQAR DPDFSPWAAL DEFPPGGTSS LPEPRTARVG 960
  961 LVPGSQPQTA RVGASAWGDP HVETDQAGSV VTEGYG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle