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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|116308953
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.77
Topology Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCPANLLSFD IVAAAVVVVL MLATAAPAIS VQQLYDYPTA NLSTRWVNNA AVLQHSVDFT  60
   61 DGSAVRSIIL RSPETIFGPS FAAGFFCAPP CKAFLFAIFI VYTDSGASIT SVRNGIPQVV 120
  121 WSANRAHPVG ENATLELTGD GILVLREADG RLVWSSGTSG RSVVGMQITE QGNLVLFDQR 180
  181 NVTVWQSFDH PTDALVPGQS LLQGMRLRAN TSNTNWTESK LYMTVLSDGL YGYVESTPPQ 240
  241 LYYEQTTNKR GKYPTRVTFM NGSLSIFIRT TQAGKPEAII ALPEAKSTQY IRLESDGHLR 300
  301 LYEWFDAGSN WTMVSDVIQK FPDDCAFPTV CGDYGICTSG QCICPLQANS SSSYFHPVDE 360
  361 RKANLGCAPV TPISCQEMQY HQFLSLTDVS YFDEGQIIAN AKNRDDCKEA CLKNCSCRAV 420
  421 MFRYYGQNDS DGECQSVTEV FSLQSIQPEI VHYNSSAYLK VQLTPSSAAP TQNSSSAPTQ 480
  481 TSSFAPTQNK SNKMKAILGS TLAASITLVL VAIIVVYVRR RRKYQETDEE LDFDILPGMP 540
  541 LRFSLEKLRE CTEDFSKKIG EGGFGSVFEG KLSEERVAVK RLESARQGKK EFLAEVETIG 600
  601 SIEHINLVRM IGFCAEKSNR LLVYEYMPGG SLDKWIYYRH NNAPLDWSTR CRIILDIAKG 660
  661 LCYLHEECRR KIVHLDIKPQ NILLDENFNA KLADFGLSKL IDRDHSKVMT VMRGTPGYLA 720
  721 PEWLTSQITE KVDVYSFGVV LMEIISGRKN IDISQPEEAV QLINLLREKA QNNQLIDMID 780
  781 KHSSDMVSYQ EEVIQMMKLA MWCLQNDSGR RPSMSTVVKV LEGAMRVENC LDYSFFNANS 840
  841 VISVQGNPST YSAPPHASIL SSPR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle