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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|116309100
Protein type: Transmembrane
Type Confidence: 0.51
Topology Confidence: 0.46
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKPKSPLNP FSLHMFFAIG FVPGKWGSVL VVQGKNLGRS FKMAGHPPNH RGEGMIDFVA  60
   61 ELARMTLVVG YPDAPEYTTI PPLSGELPYR VRLEVHGYVG TCLANMAVEA SGGTADHACQ 120
  121 EAAYLMMARL RERHDYIFHD TAYRYHPRRA HGDGVSSFRP TAGENDTTFG HMCAVMRGLD 180
  181 RMHSDLHKAT KALNDGKLMR IVALKDEIAR LKKENAQLKG LPAPGGVRIR TTPRKRTTAP 240
  241 VRIQLAPRNP PPPAAPAAPP VPPAAPAVPA VPPAPAPAPT PAFTLSFAPA SAARGSASGT 300
  301 GGCLFGMVYT RTGSRATGEG SNGEERADGV HPNGDSGNGP PPLPENPTLA QVMAHQTQMM 360
  361 AAMMQQMQQQ HQQMHQRMMQ HAEQQHQQFG PPPPQSKLPE FLRVRPPTFS STTNPMEAND 420
  421 WLHAIEKKLN LLQCNDQEKV AFATHQLQGP ASAWWDNHMA TRPPGTEVTW AEFCRSFRKA 480
  481 QVPDGVVAQK KREFRALHQG NRTVTEYLHE FNRLARYAPE DVRTDAEKQE KFMAGLDDEL 540
  541 TNQLISGDYA DFERLVDKAI RQEDQRNKMD RKRKAAQFRS NQGSQHRPRF TPGQQGGPTT 600
  601 MIVRQHRPFN SSNFHQGTSG SQNHQGGQPN RGAAPRPPMA PAQSAQPAQA KKETGAKPGS 660
  661 CFNCGELGHF ADKCPKPRRA GPRFIQARVN HASAEEAQAA PEVVLGTFPV NSIPATVLFD 720
  721 SGATHSFISK KFVGMYGLRK DELSTPMRVR TPGNSSTSVS FSPSVLIEIQ RSPFLANLIL 780
  781 LESKDLDVIL GMDWLTKFKG VIDCASRTVT LTNEKGETVV YKSPDSPKQG VSLNQIETEI 840
  841 PVDTVGKNLR KLEDIPIVCE YPEVFPEDLT TMPPKREIEF RIDLAPGTAP IYKRPYRMAA 900
  901 NELAEVKKQV DEQLQKGYIR PSTSPWGAPV IFVEKKDKTK RMCVDYRALN KVTIKNKYPL 960
  961 PRIDDLFDQL KGAKVFSKID LRSGYHQLRI REEDIPKTAF TTRYGLYECT VMSFGLTNAP1020
 1021 AFFMNLMNKV FIEFLDKFVV VFIDDILIYS KSEEEHEQHL RLVLEKLKEH QLYAKFSKCD1080
 1081 FWLTEVKFLG HVITAQGVPV DPSNVESVTK WTPPKTVSQI RSFLGLASYY RRFIENFSRI1140
 1141 ARPMTQLLKK DEKFKWTAEC DKSFEELKRK LVSAPVLILP DQTKDFQVYC DASRHGLGCV1200
 1201 LMQEGRVVAY ASRQLRPHEG NYPTHDLELA AVVHALKIWR HYLIGNRCEV YTDHKSLKYI1260
 1261 FTQPDLNLRQ RRWLELIKDY DMSIHYHPGK ANVVADALSR KSYCTALCIE GMCEELRQEF1320
 1321 EHLNMGIVEH GFVAALEARP TLVDQVRAAQ VNDPEIAELK KNMRVGKARD FHEDEHGTIW1380
 1381 MGERLCVPDD KELKDLILTE AHQTQYSIHP GSTKMYQDLK EKFWWVSMRR EIAEFVALCD1440
 1441 VCQRVKAEHQ RPAGLLQPLQ IPEWKWEEIG MDFITGLPRT SSGHDSIWVV VDRLTKVAHF1500
 1501 IPVHTTYTGK RLAELYLARI MCLHGVPKKI VSDRGSQFTS KFWQKLQEEM GTRLNFSTAY1560
 1561 HPQTDGQTER VNQILEDMLR ACALDFGGAW DKSLPYAEFS YNNSYQASLQ MAPFEALYGR1620
 1621 KCRTPLFWDQ TGERQLFGTE VLAEAEEKVR IIRERLRIAQ SRQKSYADNR RRELTFEAGD1680
 1681 YVYLRVTPLR GVHRFQTKGK LAPRFVGPYK ILERRGEVAY QLELPSTMIG IHDVFHVSQL1740
 1741 KKCLRVPEEQ ADSEHIDIQE DLTYVEKPVR ILDTSERRTR NKVTRFCRVQ WSHHSEEEAT1800
 1801 WEREDELKAA HPYLFTSSTE SRGRDSV

YRC Informatics Platform - Version 3.0
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