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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|116309103, gi...
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.32
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPGAGAAA AAGGDGGGGA PPGAGAGGGA PGAGACAANN NTNGVNSASQ SSGGPFSGYI  60
   61 LLLFLFPLLA LYCYVPVPDI HDVSSMLLRY CYVLVPDIHN AHDAISMLLV MLHVVTRSPY 120
  121 TVYAMIIVLT FWIKICRFMT IFLTIQKPDR LFSVVGFAAA LKPHAFDGSN YKRWKARVLL 180
  181 WLTAMQCFYV SRGKRSEPPL SPEEEANFEA SDCLFCGALI SVLADNIVDV YMHMPSRKDM 240
  241 WDALEAKFGV SDTGSELYVM EQFYDYKMVD DRSVVEQAHE IQMLAKELEN NNCELPDKFV 300
  301 AGGIIAKLPP SWSDFATSLK HKRQEFSVSD LIGSLGVEEK ARAKDVRGKK VEGGSSANMV 360
  361 QKKNPHASHN NKKVKSDVKP KAATNFKKKG KGKAKGDCFV YGKYGHWAKD CPEHKDRKSA 420
  421 NMVISEGGGT SVYGKILPTV LSIFHSPDWW VDTGANIHVG RGSSLLMGNG SLAVVHGVGT 480
  481 VDLKFTSGKT VQLKNVQHVP SIKKNLVSGS LLCREGFRLV FESNKCVVSK YGTFVGKGSK 540
  541 CHTCVQSKQP RKPHKTSEAR NLAPLELVHS DLCEMNGVLT KGGKKYFMTL IDDCTTFCYV 600
  601 YLLKTKDEAL HYFKIYKAEF GIIHERTPPY SPQSNGVVER KNRTLTEMVN AMLDTVGLSK 660
  661 EWWGEAVLTV CHVLNKIPMK HKEVTPFEEW ERKKLNLSYL RTWGCLAKVN VPIAKKQKLG 720
  721 PNTVDCVFLG YAIHSVGYRF LIVNSGVPDM HIGTIFESRD ATFFENEFPM KHTPSTSSQE 780
  781 TVMPHEHFAP IEHNDQTPEE NPEEDNIVDT RKSKRQRVAK SFGDDYIVYL VDDTPRTIEE 840
  841 AYSSPDADYW KEAVRSEMDS IMSNGTWEVV ERPYGCKPVG CKWVFKKKLR PDGTIEKYKT 900
  901 RLVAKGYTQK EGEDFFDTYS PVARLTTIRE LLVLAASYGL LVHQMDVKTA FLNGELEEEI 960
  961 YMDQPDSLNV IEEVKDYLSK SFEMKDLGEA DVILNIKLQR GDESGITLVQ SHYVDKILSC1020
 1021 FGYSDCKPTP TPYDPSVLLR KNRRIARDQL RYYQIIGSLM YLASATRPDI SFAVSKLSRF1080
 1081 VSNPGDDHWQ ALERVIRYLK GIMSYGIHYT GYPKVLEGYS DSNWISDADE IKATSGYVFT1140
 1141 LGGGAVS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle