YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|125591085
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.93
Topology Confidence: 0.48
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNHRLLLLL LLLLAVVGSD HGGVLAADEF TYNGFGGANL TLDGMAAVAP NGLLVLSNGT  60
   61 NQMAGHAFHP TPIRLRGGAA GGAVQSFSAA FVFAIVSNFT VLSDNGMAFV VAPSTRLSTF 120
  121 NAGQYLGILN VTDNGNADNN IFAVELDTML NPEFQDMNSN HIGVDINSMK SVQNHSAGYY 180
  181 DEATGAFNNL SLISRQPMQV WVDYDGATTV LNVTMAPLDV PKPSKPLISA PVNLSSVVTD 240
  241 TAYVGFSAAT GVIYTRHYVL GWSFSQNGAA PSLHTSSLPA LPRFGPKPRS KVLEIVLPIA 300
  301 TAAFVLALVI AAFLFVRRRV RYAEVREDWE VEFGPHRFSY KELYQATKGF KNKQLLGTGG 360
  361 FGRVYKGVLA KSNLEIAVKR VSHDSKQGMK EFIAEVVSIG HLRHRNLVQL LGYCRRKGEL 420
  421 LLVYDYMSNG SLDKYLYDKT KPVLDWGQRF QIIKGVASGL LYLHEDWEQV VIHRDIKASN 480
  481 VLLDGEMNGR LGDFGLARLY DHGVDPQTTH VVGTMGYLAP ELVRTGKATP VTDVFAFGVF 540
  541 VLEVTCGRRP LGCIAPDDQN VLLDWVQEHE RRHAALDTVD ARLCGKYDAD EARLALKLGL 600
  601 MCAHPLPDAR PTMRQVTQYL DGDAPMPEVA PTMVSYTMLA LMQNDGFDSF AMSFPSTVTS 660
  661 TASPMSADVS AVSGLSGGRI ALVTGGNKGV GLETCRQLAS RGLRVVLTAR NEARGLEAVD 720
  721 GIRRSGAADS DVVFHQLDVT DAASVARLAD FVRDQFGRLD ILINNAGISG VDRDPVLVAK 780
  781 VKDQIEGMDV DQRVEWMREN SKETYDEAKS CITTNYYGAK LVTEALLPLL LLSSSGRIVN 840
  841 VSSGFGLLRN FNSEDLRKEF DDIDSLTEKR LEELLDLFLD DFKVNLIEAH GWPTGGSSAY 900
  901 KVAKAALNAY TRILAKKYPT LRINCLTPGY VKTDISMHMG VLTPEEGASN SVKNRNRGTT 960
  961 SSAIALPGTL RSRVAVVTGG NKGIGLEVCR QLAADGITVV LTARDETRGV EAAEKLRGMG1020
 1021 LSCVIFHHLE VTDSSSVSRL ADFLTTRFGK LEILVNNAAV SGMEHAQRVD TNEEQWLVNN1080
 1081 EDLRKELDDV DNLTEERLDE VLDSFLKDFE AGALEAHGWP TAPFVAYKMA KVAMNAYTRI1140
 1141 LARRHPELRV NCVHPGYVKT DMTINSGFLT PEEGGRNVVT VALLPDGGPT GAYFDEGREA1200
 1201 SFLE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle