YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20810544, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTEKESPEP DCQKQFQAAV SVIQNLPKNG SYRPSYEEML RFYSYYKQAT MGPCLVPRPG  60
   61 FWDPIGRYKW DAWNSLGKMS REEAMSAYIT EMKLVAQKVI DTVPLGEVAE DMFGYFEPLY 120
  121 QVIPDMPRPP ETFLRRVTGW KEQVVNGDVG AVSEPPCLPK EPAPPSPESH SPRDLDSEVF 180
  181 CDSLEQLEPE LVWTEQRAAS GGKRDPRNSP VPPTKKEGLR GSPPGPQELD VWLLGTVRAL 240
  241 QESMQEVQAR VQSLESMPRP PEQRPQPRPS ARPWPLGLPG PALLFFLLWP FVVQWLFRMF 300
  301 RTQKR

Type	Start	End	Confidence
Non-Cytoplasmic	1	273	0.94
Transmembrane Helix	274	297	0.89
Cytoplasmic	298	305	0.90