YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|182891972, gi...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAALLKLDL ATVGLTLFLG LIFLVLFEIF RINSYKGRFP PGPTPLPFVG NLPHLLKNPM  60
   61 GFKRSLSEYG GLATVFIGRQ PAISINTIQL AKEALVQDVF SGRPPLPIFD WISHGLGIIM 120
  121 VTFNHSWRQQ RRFALHTLRN FGLGKKTVED RVLEESQYLI AEMLKDEGKS MNPQHALQNA 180
  181 VSNIICSIVF GDRFEYDNKR FEYLLKILNE NIMLTGSAAG QIFNLVPFIK HFPGPHQKVK 240
  241 QNADDLFNFI RDEAKEHKQT LDPDSPRDFI DAYLLEIEKQ KSSKESTFHE EHLVVSTSDL 300
  301 FLAGTDTTET TIRWGLIYLI QNPDVQERCH EEIVQVLGYD RLPSMDDRDK LPYTLATVHE 360
  361 IQRCGNIAPK LLHETIRRTK LHGYDIPQGT TIIANFTAMF SDKELWKHPD AFNPENFLDE 420
  421 NGQFSKPEYF FPFSLGPRAC LGEALARTEL FLFITSLLQR IRFSWPPNAK PIDMDGIVGI 480
  481 VRSPEPFNII CHSRDTKD

Type	Start	End	Confidence
Cytoplasmic	1	9	0.61
Transmembrane Helix	10	30	0.88
Non-Cytoplasmic	31	498	0.69