YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116875803, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLLKLFLVI LMLSTFTGTA DGYYDYTKNE CFYSTSDYSD MVYLLSFSFN KVVDTQFNSS  60
   61 VGKFVGYTEQ GLIFAENFNK DQAYLQQSKA AVDTFCRHNA EISDSAVRDK AVLPEVTIKS 120
  121 VKQAEGRHPA VLLCSAYEFY PKKIKMSWLR DGKEVTSDVT STMEMADGDW YYQIHSHLEY 180
  181 TPKSGEKIQC LVEHASLTQP LTKDWNPHIS ESDRNKLAIG ASGLVLGIII AIAGLIYYKK 240
  241 KSTGRILVPN

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	216	0.99
Transmembrane Helix	217	238	0.94
Cytoplasmic	239	250	0.97