YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116284035
Protein type:	Globular with Signal Peptide
Type Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKKSRRRGA AQWAAVRAQA GLTATDENED DLGLPPSPGD SSYYQDQVDE FHEARSRAVL  60
   61 AKGWNEVESG EEDGDEEEEV LPLDIDDGDD EDGESSEEEE VGEDDDGGSS VQSEAEASVD 120
  121 PSLSWGQRKK LYYDTDYGSK SRGRQSQQEV EEEEREEEEE AQIIQRRLAQ ALQEDDFGVA 180
  181 WVEAFAKPVP QVDEAETRVV KDLAKVSVKE KLKMLKKESP ELLELIEDLQ AKLTEVKDEL 240
  241 EPLLQLVEKG VIPTGRGSEY LKTKYNLYLN YCANISFYLI LKARRVPAHG HPVIERLVTY 300
  301 RNLINKLSVV DQKLSSEIRH LLTAKDGAVK KEMTPKAKLT KTKPKSVKQA AAVALTDEPD 360
  361 FDGAALKYYK EMEDRQELKK KKKKKKKKK

Type	Start	End	Confidence
Signal Peptide	1	20	0.93
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	389	0.99