YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|126723425, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	131	0.97
Transmembrane Helix	132	153	0.95
Cytoplasmic	154	161	0.90
Transmembrane Helix	162	180	0.89
Non-Cytoplasmic	181	213	0.73
Transmembrane Helix	214	234	0.70
Cytoplasmic	235	240	0.85
Transmembrane Helix	241	262	0.94
Non-Cytoplasmic	263	282	0.91
Transmembrane Helix	283	305	0.91
Cytoplasmic	306	325	0.94
Transmembrane Helix	326	347	0.87
Non-Cytoplasmic	348	356	0.81
Transmembrane Helix	357	379	0.91
Cytoplasmic	380	422	0.97
Transmembrane Helix	423	442	0.86
Non-Cytoplasmic	443	445	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPCARGLFW LLTCLTTVLC SLHPECEYIF QLARDEQRCL REITDLGNLS SSSGCLSVWD  60
   61 SVVCWPSAVV GETVQSPCPA VFSLFENNTE GVVSRNCTVT GWSRPFPPYH VACSAEDNIP 120
  121 EESYFATVKL IYTVGYGASL LSLSVAVLIL LLFRRLHCTR NYIHMQLFFT FILKSVAVFI 180
  181 KDVTLFSSDD TDHCSLSTVA CKTAVVFCHY CVMSNFFWLL VEAVYLNSLL VSVFLRRRRC 240
  241 LWAFALLGWG VPLVCIVLWI FSRLYFEDTE CWDINEDSPY WWIIKGPIVI SIAVNFLLFL 300
  301 NIIRILMQKL NPRLIQFNNS DQYRRLTKST LLLIPLFGTH YMIFSFLPDY FNTGLRLCIE 360
  361 LCLGSFQGLI VAILYCFLNQ EVQNEIRLRW LRYQEGSYAV VPVGVKGSQM DTPVHRQTRR 420
  421 NSIKHFTVCI LFCSFYMTTI GLKGT