YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116218725, gi...
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAKAKTITV STDVLTLSID TLGGDVVSAK LNQYSEELNS PESFVLLQNT QGHQFIAQSG  60
   61 LVGPQGIDVT SNNRPAYQVS ADSFTLAEGQ DELRIPMTYQ ANGIDYTKTF ILKRGSYAVD 120
  121 VVFDVANNSG SEATLGMYAH LRQNLLDSGG NLAMPTYRGG AYSTSDVRYK KYSFDDMKDR 180
  181 NLSAPNDVTV NWVAMIQHYF ASAWIPRDEP QAQLYSRVIN NLGDMGIRTP NKTIANGDKA 240
  241 EFEATLWVGP KLQDQMAATA PNLDLVVDYG WLWFIAKPLH WLLSVIQNFV GNWGVAIICL 300
  301 TFIVRGAMYP LTKAQYTSMA KMRMLQPKLQ AMRERIGDDR QRMSQEMMEL YKKEKVNPLG 360
  361 GCLPILLQMP IFIALYWALM ESVELRHSPF FGWIHDLSAQ DPYYILPLLM GASMFVIQKM 420
  421 SPTTITDPMQ QKIMTFMPVM FTFFFLWFPS GLVLYWLVSN IVTLIQQTLI YKALEKKGLH 480
  481 SK

Type	Start	End	Confidence
Non-Cytoplasmic	1	288	0.78
Transmembrane Helix	289	309	0.88
Cytoplasmic	310	356	0.95
Transmembrane Helix	357	380	0.90
Non-Cytoplasmic	381	400	0.92
Transmembrane Helix	401	418	0.91
Cytoplasmic	419	435	0.77
Transmembrane Helix	436	458	0.88
Non-Cytoplasmic	459	482	0.84