YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116131234, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSNGELLGLA VMAFFIITLS TTARYYFKFF CFIAFSVVCA VGPVPLMLFR PRDYRNALIP  60
   61 AYLCIGFGKM LGASFTVRGK ENINRNHGGI VLMNHQSALD LIVLAELWPI MGRSTVVAKK 120
  121 EVLYMFPFGL ACWLWGTLFI DRQNRDSAKS VINKEAKAIN EKQAKLLFFP EGTRGNGDKL 180
  181 LPFKKGCFHV AVESQAFIQP VVISKYHFLK SKAKIFNRGQ NIIKILPEVS CAGLSKDDIP 240
  241 ALMERVQKMM QREYEQLSEE SLSINNISEV H

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.40
Transmembrane Helix	6	23	0.71
Cytoplasmic	24	28	0.36
Transmembrane Helix	29	49	0.91
Non-Cytoplasmic	50	56	0.53
Transmembrane Helix	57	77	0.81
Cytoplasmic	78	121	0.46
Transmembrane Helix	122	140	0.85
Non-Cytoplasmic	141	271	0.56