YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116130817, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESSSSSPLP ADDCGSSPAD ALQPHVAPPD GAESAPSVQE GRSTPGQDPA GPATTLEPQN  60
   61 PRLLSSLYSF LVIVSFFLVG FAAFRNTLTW HLQRFWGASG DFWQSQWDRF IDFTGEDPAH 120
  121 LWVASTTIFT MAVYWVFGGI YTLFDVTCRP AIIRRYKMQP GTNEPVDRRR LAKVIATVLL 180
  181 NQTVVGVPMA YCMYQAMRFR GLNDLRELPT FHWVLAELSF CIFIEEIGFY YAHRLLHSRR 240
  241 IYRYIHKQHH EWTAPIAITA IYCHPVEHVF SNLVPPFLGI FMLGSHVAVA WLWFTLVILS 300
  301 TLNAHSGYHL PFFPSPEAHD FHHLKFNQCF GVLGVLDRLH GTDALFRTTK AYARHIMMLS 360
  361 FIPAREAFPE PAKK

Type	Start	End	Confidence
Cytoplasmic	1	66	0.97
Transmembrane Helix	67	88	0.89
Non-Cytoplasmic	89	127	0.90
Transmembrane Helix	128	148	0.86
Cytoplasmic	149	173	0.89
Transmembrane Helix	174	194	0.89
Non-Cytoplasmic	195	210	0.87
Transmembrane Helix	211	232	0.91
Cytoplasmic	233	251	0.88
Transmembrane Helix	252	270	0.75
Non-Cytoplasmic	271	276	0.68
Transmembrane Helix	277	302	0.77
Cytoplasmic	303	374	0.83