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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|116132064, gi...
Protein type: Transmembrane
Type Confidence: 0.94
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AEAHVALTFP PARKYDLDFL DNSRTKPPCG MPKGSLKTSF IEGSTFNVSW HLAYPHRGGF  60
   61 RLEILDTKEK PILSLTPSSK ERRFVREDAT AQQFQVSLPR NFTCRDCTLR LVRQADEWGG 120
  121 NYRFWSCADV DIVPRREHHE TCSGHGKFIA RCKCDKKYYG PRCEFWDECV TNQDCGIQGT 180
  181 CVDLGGTSLP RRQCYCRLGW FGPGCNKKSP IKSTDIDYSV YKAKTLSPDL NVYWRVLKEQ 240
  241 KELEVVLKVN GTSWVALGVR PRKLTAECKN FPLIAAPGAA GSEAGVAEPE PASEPTSEPG 300
  301 KEGNQKTLQS QSELIEIVLS LFSEEPNSEP EPGAEPGAEP GAEPGAEPGA EPEPGAEPGA 360
  361 EPGKFPTRVM IIKTLYSLLF SSVVEPKSEP EPASEPGAEP NAEPEPKSES EPGAEPTSEP 420
  421 ASEPASEPSS EPGKKIEHED FRTTISNSMV GIILEPKSEP EPEPGAEPGA EPGAEPEPKS 480
  481 EPEPTSEPEP ESATEPTPEP KGPAKKSKRA AATTPAAEPE PASEPAAKPK PKPTAAAAGP 540
  541 KLKLNPYTPR HDFNPMDCTD IVIGTARGDN HRVWDYYTRD RSTPRMDSFW GGKSDLTATG 600
  601 GFERDGVTTI VYRRPLAASE PTDHEIVDDL MHVIWARGQE PGAYVHSPPS GVEKETASVR 660
  661 EFYQPDELKY HGHRMQRGVT QINFLEEEVQ HKGVIVPAGP VGHELDNECH GFYKYPRTCD 720
  721 PEQANCEYFL SWQTVARGEA VHFHLETKHT ATWTGVGFSD DQRMSQTDAI IGWVDKSGRP 780
  781 FLMDTWINGY SAPKLDDRQD LYNASGAIQN GRTVLDFTRK RVTGDESDLA FAEDRCLYMM 840
  841 FPIEGGAFNP VNKKLGKHAS VPVVTDTRVC IKSCAKQFEQ LLTVAATPAP DRIAYGASIK 900
  901 LTNLAAGFQV PDSGTPEHRD LSKSVTDTFN GVLREVPGFY RTDVQEFEKY VDADGSVVVK 960
  961 MNILVDKEMK NGTKNLLADD PAKLELTLHN LMVNNLSSGK VGAFSVDPTY LEFTQLEGQA1020
 1021 SSPKEEYELL PAGVRLYLIL GCIAGLVFIA IVQATCTIIK TRRTNRLKDQ LIPNSAWKDY1080
 1081 SSNTNYAFDN FEPESKHHKG RSSDRGYSNG NSQQTTLQMS HSPNKSQYYE IDRTDGGGMP1140
 1141 THRNGSSGYP YPPGQPRHGY DRTGDRSSYA DRAYSLPRPM HQQQQQQHQQ QQRPMPDSSD1200
 1201 LYFTPTQRKY SGEVVRVFVD YNKDKK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle