YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116127717, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEGYEFPLA QHKAAPIERW LEAQILPGDT LQAIALRFNC SIPQLKKLNK IDKDNEIYAR  60
   61 NVIRVPMTPH SILLETLPRV HTSGNSSPKN ITTTPPSVSH VAVEAKATLD EKLILAAPSS 120
  121 SAATQFPRKS SGKHRDRADR SSEIALDDLH GDEDAGLSEP LLLSGEYDDS FPQPRPLRLP 180
  181 ANDFSCNGSD CDISWICLLV FILALCFAIP LIYVVYVAEH IEKYHHDS

Type	Start	End	Confidence
Cytoplasmic	1	194	0.65
Transmembrane Helix	195	217	0.90
Non-Cytoplasmic	218	228	0.66