YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|10440468
Protein type: Transmembrane
Type Confidence: 0.92
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VRGLVWASSW GWEVSALPAV QSASPRLPPG PRGPLPPASP AALPRCPLPS PGAPGPLLPS  60
   61 GAGPSPRPGA PPLPRVLRPR MPGPRGAAGG LAPEMRGAGA AGLLALLLLL LLLLGLGGRV 120
  121 EGGPAGERGA GGGGALARER FKVVFAPVIC KRTCLKGQCR DSCQQGSNMT LIGENGHSTD 180
  181 TLTGSGFRVV VCPLPCMNGG QCSSRNQCLC PPDFTGRFCQ VPAGGAGGGT GGSGPGLSRT 240
  241 GALSTGALPP LAPEGDSVAS KHAIYAVQVI ADPPGPGEGP PAQHAAFLVP LGPGQISAEV 300
  301 QAPPPVVNVR VHHPPEASVQ VHRIESSNAE SAAPSQHLLP HPKPSHPRPP TQKPLGRCFQ 360
  361 DTLPKQPCGS NPLPGLTKQE DCCGSIGTAW GQSKCHKCPQ LQYTGVQKPG PVRGEVGADC 420
  421 PQGYKRLNST HCQDINECAM PGVCRHGDCL NNPGSYRCVC PPGHSLGPSR TQCIADKPEE 480
  481 KSLCFRLVSP EHQCQHPLTT RLTRQLCCCS VGKAWGARCQ RCPTDGTAAF KEICPAGKGY 540
  541 HILTSHQTLT IQGESDFSLF LHPDGPPKPQ QLPESPSQAP PPEDTEEERG VTTDSPVSEE 600
  601 RSVQQSHPTA TTTPARPYPE LISRPSPPTM RWFLPDLPPS RSAVEIAPTQ VTETDECRLN 660
  661 QNICGHGECV PGPPDYSCHC NPGYRSHPQH RYCVDVNECE AEPCGPGRGI CMNTGGSYNC 720
  721 HCNRGYRLHV GAGGRSCVDL NECAKPHLCG DGGFCINFPG HYKCNCYPGY RLKASRPPVC 780
  781 EDIDECRDPS SCPDGKCENK PGSFKCIACQ PGYRSQGGGA CRDVNECAEG SPCSPGWCEN 840
  841 LPGSFRCTCA QGYAPAPDGR SCLDVDECEA GDVCDNGICS NTPGSFQCQC LSGYHLSRDR 900
  901 SHCEDIDECD FPAACIGGDC INTNGSYRCL CPQGHRLVGG RKCQDIDECS QDPSLCLPHG 960
  961 ACKNLQGSYV CVCDEGFTPT QDQHGCEEVE QPHHKKECYL NFDDTVFCDS VLATNVTQQE1020
 1021 CCCSLGAGWG DHCEIYPCPV YSSAEFHSLC PDGKGYTQDN NIVNYGIPAH RDIDECMLFG1080
 1081 SEICKEGKCV NTQPGYECYC KQGFYYDGNL LECVDVDECL DESNCRNGVC ENTRGGYRCA1140
 1141 CTPPAEYSPA QRQCLSPEEM DVDECQDPAA CRPGRCVNLP GSYRCECRPP WVPGPSGRDC1200
 1201 QLPESPAERA PERRDVCWSQ RGEDGMCAGP LAGPALTFDD CCCRQGRGWG AQCRPCPPRG1260
 1261 AGSHCPTSQS ESNSFWDTSP LLLGKPPRDE DSSEEDSDEC RCVSGRCVPR PGGAVCECPG1320
 1321 GFQLDASRAR CVDIDECREL NQRGLLCKSE RCVNTSGSFR CVCKAGFARS RPHGACVPQR1380
 1381 RR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle