YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119112513, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRNVMSRL LVLSSVGFGG YLTGTYLERK RLTIATESFC SKPGLPIFGT VSAATPIPAD  60
   61 SPPSAMVNVS RVGQIMKYGF PGLDNVRSFD DYVLSYDRRT RVAHWVFEHL TPATVKHNDA 120
  121 VDRAKCDFKP DESIHPFFRS LNTDYKGSGF DRGHLAAAGN HRMEQKHCDQ TFYLTNMAPQ 180
  181 AREMDWFLGF NRDKWNDLER YVRKLTKQYP NVYCCTGPLY LPRREDDGKL YVKYQVIGSN 240
  241 NVAVPTHFYK VIVMETSDGK LEMESYVLPN QKIDNGTPIT MFQVPPETVE RAAGLLFFDK 300
  301 LARNKLAKIN GKKV

Type	Start	End	Confidence
Signal Peptide	1	24	0.67
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	314	0.98