YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|118790164, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGPIFGSSS ALGGSSGGNR HLVEFRAGRM NMVNKMVHPD NRKGLVYVYQ AEDGLIHFCW  60
   61 KDRTSGTVED DLILFPDDCE FKKIDYVKNG RVYVLKFKSS SRRLFFWMQE PKTDRDDEWC 120
  121 RRINEVINNP PSGNSIGSGG RNGGNDNGDL QYMLNNMSQQ QIMQLFGGVG QMGGLSSLLG 180
  181 SMTAATPSNR SSSSLATSNN GNGGSTTTPS AAVNAPSTPR APKKTSGTTK TNSATPVGRN 240
  241 AGSAGTADGG TRILLRNIDL ASAVNSQTLA SIISDQEKVD ALVAHLPQLE GDENKKEQLK 300
  301 ETISSPQFQQ ALSMFSNALQ SGQLGPVVSQ FQLNADAVAA ANAGDLEQFV KALENSEKTP 360
  361 ASEASGATNK QSAGSSTSTD QPKPSEVAKE ENGHGKTQNK DQDDE

Type	Start	End	Confidence
Signal Peptide	1	17	0.46
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	405	0.83