YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPDA_LEPBJ
Protein type:	Globular with Signal Peptide
Type Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIGVIGSGS FGTALGSLLA DKGYEVTLWC RNDSQIESIN RNHINNKHLP DFTLPEKLTA  60
   61 SKDLRTVVQG KDMIVSSPPS HALTEILREI KEYLPEKVPI VSASKGIENG TLRLVSEIFE 120
  121 SELPGKYHSY LSYLSGPSFA KEIIQKVPTI VSIASRSETT ARKVQEIFSF LYFRTYWTPD 180
  181 VIGVEVGGSL KNVIALAAGV SDGLGFGQNT RAALITRGLN EITKIGLKLG ADPMTFLGPS 240
  241 GMGDLILTCC GEQSRNRTVG FRLGKGETLE QILSGMNEVA EGIKTTQSAY ELSQKLGIEM 300
  301 AITNEVYKML YEDKNPKEVV KDLMKRDLKR EGVLV

Type	Start	End	Confidence
Signal Peptide	1	20	0.89
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	335	0.99