YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCDC90A
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDCGSVGGQR TQRLPGRQRL LFLPVGLSGR PGGSETSARR CLSALSDGLG ALRPRAPAAR  60
   61 GGVSRASPLL LLLLVPSPRL AAAAPRRQLG DWERSRLGYA APPAGRSSAW RCSPGVAAAA 120
  121 GALPQYHGPA PALVSCRREL SLSAGSLQLE RKRRDFTSSG SRKLYFDTHA LVCLLEDNGF 180
  181 ATQQAEIIVS ALVKILEANM DIVYKDMVTK MQQEITFQQV MSQIANVKKD MIILEKSEFS 240
  241 ALRAENEKIK LELHQLKQQV MDEVIKVRTD TKLDFNLEKS RVKELYSLNE KKLLELRTEI 300
  301 VALHAQQDRA LTQTDRKIET EVAGLKTMLE SHKLDNIKYL AGSIFTCLTV ALGFYRLWI

Type	Start	End	Confidence
Non-Cytoplasmic	1	336	0.61
Transmembrane Helix	337	358	0.70
Cytoplasmic	359	359	0.41