YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116330098, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFGTVVGFG AACVLMIFGI ISAGLSPLDL FDVPSILITF GGATAGTIMA VPWESTLAVG  60
   61 KVTQKVFKTE KHDLIELIKT LVSFSEKARR EGLLALEDDV NELPDEFLRK GITLVVDGTD 120
  121 PELVRNIMET EMGNIASRHN NGKAWWENWG ALAPAFGMIG TLIGLVQMLK NLGSGDPSAI 180
  181 GTGMAAALIT TLYGSMGANM FAIPVMKKLM RKSEDELTIK QIMIEGTLSI QSGDNPRIVK 240
  241 DKLSSFLPPS ERDVLKDDSE

Type	Start	End	Confidence
Cytoplasmic	1	5	0.88
Transmembrane Helix	6	26	0.93
Non-Cytoplasmic	27	34	0.72
Transmembrane Helix	35	53	0.91
Cytoplasmic	54	144	0.97
Transmembrane Helix	145	169	0.85
Non-Cytoplasmic	170	179	0.91
Transmembrane Helix	180	203	0.90
Cytoplasmic	204	260	0.99