YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116121824, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.65
Transmembrane Helix	19	39	0.89
Cytoplasmic	40	43	0.43
Transmembrane Helix	44	67	0.71
Non-Cytoplasmic	68	91	0.61
Transmembrane Helix	92	113	0.90
Cytoplasmic	114	121	0.76
Transmembrane Helix	122	141	0.89
Non-Cytoplasmic	142	171	0.91
Transmembrane Helix	172	192	0.94
Cytoplasmic	193	200	0.92
Transmembrane Helix	201	220	0.89
Non-Cytoplasmic	221	261	0.89
Transmembrane Helix	262	282	0.68
Cytoplasmic	283	300	0.69
Transmembrane Helix	301	324	0.81
Non-Cytoplasmic	325	338	0.61
Transmembrane Helix	339	359	0.83
Cytoplasmic	360	396	0.60
Transmembrane Helix	397	425	0.83
Non-Cytoplasmic	426	741	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNILYFFPNV SWNDLRHDLS SSIVVFLVAL PLCIGVAFAS GTPIVSGLIS GIVGGIVISL  60
   61 ISKSPLSVSG PAMGLTVIVF DSIQTLGSFN DFLFAFCLAG VLQITLGFLK AGILSNFFPS 120
  121 SVIKGMLAAI GAVLILKQIP HAIGYDMDYE GDMVFFQQDQ ENTFSEILTA FHRFTPGAII 180
  181 LSSVSLALIL IWEKLKLHKK LIIHGSLVAI LVSVLLNEVF KTFELGIAVG SEHMIQPIQL 240
  241 NGITDFFRGN YFPSFSQWKN QAIYLTAIKI CLVMSLETLL NLDAIEKLDP QRRIVSKNRE 300
  301 LIAQGTGNLF SAIFGGLPIT SVIIRSSTNL QAGAKTRFSA FLHGLLILLS LILIPTWISK 360
  361 IPLASLAAVL LVVGYKLTDY KILQTQYRKG MDQFIPFIST LIGIVFSDVL IGIGIGCLFS 420
  421 VFFIVRRNIL NPYEFNKKEM TYGVEVRIDL SEDVSFLNKS SMLYKLDKVP DNAHLIIDGS 480
  481 KSKYIDPDVL EIIEDFKIVA EFRNIKVEII DVTSTYQKVK NKPLDPIIQQ DYQKLFENNR 540
  541 IWVEEKLLKD PNYFKNLALG QTPKYLLISC SDSRISVNEM TGTNAGELFV HRNIANLVID 600
  601 TDMNLMSVLQ YSVEVLKVKH IVVCGHYGCG GVKAAIDGKY HGLIDAWLRH IKQVYRMNRK 660
  661 ELSGILDEDE KHKKLVELNV REQVYNLCMT TIVQNAWSQG NNLQLHGWVY NLKEGILLDL 720
  721 NIDINKDFRD YDIFRYKFET N